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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1425s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31487.4 Da PI: 6.6805 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 132 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAa+a+++a+ kl+g SapurV1A.1425s0060.1.p 132 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 182 7********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-33 | 131 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 132 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-31 | 132 | 190 | No hit | No description |
PROSITE profile | PS51032 | 24.566 | 132 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 132 | 191 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 132 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
AFPGFFDSPD PSFFEFTSVF SPAQDNKTNI FEFEAKPEII DLSTPKPLDS TSHLNIQPSS 60 STSSFELVKP QIISQPSNNF FYEESRPGVH PTRKPSLKIS LPGKKSEWIQ FSNQDPQPLD 120 DNSGVAVEAK RHYRGVRQRP WGKYAAEIRD PNRRGSRVWL GTFDTALEAA RAYDRAAFKL 180 RGSKAILNFP LEAGKCDVRA NEEGERKRLR ECDAEEVEDV KRVMRVVKRE EPERDVPLTP 240 SCWTAVWDHC GDSNGVFNVP PLSPLSPHPP LGFSQLMVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-29 | 131 | 191 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-29 | 131 | 191 | 4 | 64 | ATERF1 |
3gcc_A | 6e-29 | 131 | 191 | 4 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX220974 | 0.0 | JX220974.1 Populus x canadensis cultivar Nanling895 ERF5-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368979.1 | 1e-162 | Ethylene responsive element binding factor 5 family protein | ||||
Swissprot | O80341 | 3e-68 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | J7LJY7 | 1e-176 | J7LJY7_POPCA; ERF5-2 | ||||
STRING | POPTR_0001s15400.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 8e-48 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1425s0060.1.p |